Methods:
Target AM-associating species are Acer rubrum, Cornus florida, Liquidambar styraciflua, Liriodendron tulipifera, and Sassafras albidum, while target EM-associating species include Fagus grandifolia, Juniperus virginiana, Pinus strobus, Quercus alba, and Tsuga canadensis. UMBS is too far north for many of these species but includes the northernmost populations for others, and I am interested in capturing mycorrhizal fungal compositions at the very northern ends of their ranges.
At each site from Alabama to lower peninsular Michigan, I will collect root samples from four to five individuals of five AM- and five EM-associating tree species. Soil cores will be taken with a soil corer under the canopy of each individual tree north, east, south, and west of the tree trunk and pooled to form one sample. I will target trees of similar size and record the diameter at breast height of each plant. Ten to twenty soil cores will also be collected away from target species and pooled to capture fungal communities in soil not conditioned by target species. In sites in peninsular Michigan, where we do not expect to find target tree species, I will only collect ten to twenty soil samples from forest floor not directly under any one tree’s canopy. All samples will be stored in Ziploc bags on ice in the field and transported back to the University of Tennessee, Knoxville for further analysis. DNA will be extracted from .25g of soil per sample with the DNeasy PowerSoil extraction kit. DNA will be quantified with a microplate reader, amplified with ITS2 primers, and meta-barcoded with a MiSeq Illumina sequencer. Sequences will be processed with the DADA2 pipeline into amplicon sequence variants using standard methods in the Kivlin lab (See Kivlin et al. 2021).
I will also measure soil biogeochemical properties (e.g., pH, soil nutrients, soil carbon) and climatic variables for each site will be estimated using the CHELSA database. The influence of these variables along with latitude and tree species on mycorrhizal fungal composition and diversity will be parsed using the VarPart function in Vegan in R. I will also assess the turnover in mycorrhizal fungal communities across latitude and the range determinants of specific mycorrhizal fungal taxa to understand if mycorrhizal fungi and plants are shifting their ranges at similar rates with global change.