Forests play an integral role in the terrestrial water cycle and link exchanges of water between the land surface and the atmosphere. To examine the effects of an intermediate disturbance on forest water cycling, we compared vertical profiles of stable water vapor isotopes in two closely located forest sites in northern lower Michigan. At one site, all canopy‐dominant early successional species were stem girdled to induce mortality and accelerate senescence. At both sites, we measured the isotopic composition of atmospheric water vapor at six heights during three seasons (spring, summer, and fall) and paired vertical isotope profiles with local meteorology and sap flux. Disturbance had a substantial impact on local water cycling. The undisturbed canopy was moister, retained more transpired vapor, and at times was poorly mixed with the free atmosphere above the canopy. Differences between the disturbed and undisturbed sites were most pronounced in the summer when transpiration was high. Differences in forest structure at the two sites also led to more isotopically stratified vapor within the undisturbed canopy. Our findings suggest that intermediate disturbance may increase mixing between the surface layer and above‐canopy atmosphere and alter ecosystem‐atmosphere gas exchange.